PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023916583.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family MYB
Protein Properties Length: 309aa    MW: 34991.4 Da    PI: 6.5018
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023916583.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.38.2e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l++++  +G g+W+++++  g+ R++k+ ++rw +yl
   XP_023916583.1 14 RGLWSAEEDEKLINYISNYGHGCWRSVPKFAGLQRCGKSYRLRWINYL 61
                     788*******************************************97 PP
2Myb_DNA-binding43.76.2e-1467110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rgr+++eE  l+ ++   lG++ W+ Ia+ ++ gRt++++k++w++
   XP_023916583.1  67 RGRFSPEEAALITELQGILGNK-WAQIAKQLP-GRTDNEVKNFWNT 110
                      89********************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    
MGHHSCCDKK KVNRGLWSAE EDEKLINYIS NYGHGCWRSV PKFAGLQRCG KSYRLRWINY  60
LRPDLKRGRF SPEEAALITE LQGILGNKWA QIAKQLPGRT DNEVKNFWNT SIRKKLISYD  120
APAIATFLDV HFNGNSEEGL FSLNANPNWI LNSRQDQLYL PTPTPNLQGF DHGDLKLEQT  180
NYVANLVQYP PPMAPPSNSS SYDPLWSLGY LPHKNFDPNQ EHQNFSSSGA TQHYIGDKLI  240
GPSIATPNYD EDPLTVPMIP NPCEIINGNL CGMSYSCASL ELDPLARFPY FPVGCDYPYD  300
LHVPNNHME
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.22e-70MYB family protein