PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023916617.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MIKC_MADS

Protein Properties

Length: 217aa MW: 24653.2 Da PI: 5.776

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023916617.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	82.3	3e-26	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n++ rqvtfskRr g++KKA+ELS+LCdae+ +++fs tgkl+e++s XP_023916617.1 9 KKIDNTTARQVTFSKRRRGLFKKAFELSILCDAEIGLMVFSATGKLFEFAS 59 68***********************************************86 PP
2	K-box	47.4	8e-17	93	169	20	96
K-box 20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 +a L keie+ +e+R++ Ge+L ++++eLq+Le++Le +l+++ ++K e +le+i +lq+k +l een++L++ XP_023916617.1 93 SYAMLSKEIEEKTHELRKIRGEELPGMDIEELQKLEKKLEVGLSRVIETKGEGFLEEITTLQQKGAQLMEENQRLKQ 169 678899*********************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence
MTRRKIQIKK IDNTTARQVT FSKRRRGLFK KAFELSILCD AEIGLMVFSA TGKLFEFASS 60 SMQQVIERHN LHPDNLGKMD QLSLELQLEN GTSYAMLSKE IEEKTHELRK IRGEELPGMD 120 IEELQKLEKK LEVGLSRVIE TKGEGFLEEI TTLQQKGAQL MEENQRLKQI EDLLSTQTHV 180 LEQGQSSESI TNICSSSDPQ DNDSSNISLK LGLPFPK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	1e-71	MIKC_MADS family protein