PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023916980.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family GRAS
Protein Properties Length: 548aa    MW: 61911.2 Da    PI: 6.4529
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023916980.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS459.42.1e-1401785481374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++ L+ cA+avs++dl +a++l+ +l++++s +g+p+qRl ay++e+L arl++s+s++++al+++e +   s++ l+++++++ev+P++kf++
  XP_023916980.1 178 LKQILIFCAKAVSDNDLLMAHWLMDELRQMVSVTGEPIQRLGAYMLEGLVARLSSSGSTICRALKCKEPE---SKDLLSYMHILYEVCPYFKFGY 269
                     5789*****************************************************************9...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     + aN aI ea++ e+rvHiiDf+i qG QW++L+qa+asRp+gpp++RiTg++++ s   +   l+ +g+rL+++A++++vpfef++ +a +  +
  XP_023916980.1 270 MSANGAIAEAMKDEKRVHIIDFQIAQGSQWLTLIQAFASRPGGPPHIRITGIDDSMSAyaRGGDLNIVGKRLSRLAKSFKVPFEFHA-AAMSGCE 363
                     ******************************************************888789999************************.89999** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     ++le+L v+pgEalaVn++++lh+++desvs++++rd++L+lvkslsPkvv++veqe+++n++ F  rfle+l+yy+a+f+s++++lpre++eri
  XP_023916980.1 364 VQLENLGVRPGEALAVNFAFMLHHMPDESVSTQNHRDRLLRLVKSLSPKVVTLVEQESNTNTAAFYPRFLETLNYYTAMFESIDVTLPREHKERI 458
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +vE+++l+re+vn++aceg er+erhe l+kWr+r+++aGF+p+pls+ +++++k+ll+++ ++ yr++e++g+l+lgW+dr Lv+ +aW+
  XP_023916980.1 459 NVEQHCLAREVVNILACEGPERVERHELLGKWRSRFKMAGFTPYPLSSLVNATIKTLLENYCNK-YRLQERDGALYLGWMDRDLVASCAWK 548
                     **************************************************************66.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    
MQASQRLRIS GMSNGLYYQP IREVEANCLP QFQTFDRQPY YNDSSQASNN YLAQNFYERY  60
CTLESSSANG SYAVHNSPST VSFSPNGSPM SQQDSHSYPA DPHYSPDNTY GSPISGSCIT  120
DEVNDFKHKL KELENVMLGP DCNFLDSYDS SFQNGINNTS LEMDSCRQVM EAISNRNLKQ  180
ILIFCAKAVS DNDLLMAHWL MDELRQMVSV TGEPIQRLGA YMLEGLVARL SSSGSTICRA  240
LKCKEPESKD LLSYMHILYE VCPYFKFGYM SANGAIAEAM KDEKRVHIID FQIAQGSQWL  300
TLIQAFASRP GGPPHIRITG IDDSMSAYAR GGDLNIVGKR LSRLAKSFKV PFEFHAAAMS  360
GCEVQLENLG VRPGEALAVN FAFMLHHMPD ESVSTQNHRD RLLRLVKSLS PKVVTLVEQE  420
SNTNTAAFYP RFLETLNYYT AMFESIDVTL PREHKERINV EQHCLAREVV NILACEGPER  480
VERHELLGKW RSRFKMAGFT PYPLSSLVNA TIKTLLENYC NKYRLQERDG ALYLGWMDRD  540
LVASCAWK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein