PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023917059.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family M-type_MADS
Protein Properties Length: 233aa    MW: 26121.6 Da    PI: 9.656
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023917059.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.82.8e-182655736
                    HHHHHHHHHHHHHHHHHHHHHHHHHT-EEE CS
          SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaeva 36
                    ++rqvtfskRr+g++KKA+EL+vLC+aeva
  XP_023917059.1 26 TKRQVTFSKRRAGLFKKASELCVLCGAEVA 55
                    89***************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MDMVIPKKTK KTQGRQKIEV KQLDGTKRQV TFSKRRAGLF KKASELCVLC GAEVANEKGK  60
GKGKTYCFGH PDVDTVVNRY LSENKNNYED NSGFGDSLPV DVNEFNRQYA EAEKVLEKEK  120
RHLAEIEQKA KERGGGLWWD EALDENMGLE EMHQYKWALQ EVRKKVADRV NEMRMNKSMS  180
KSTVVVPSVD LRLGHVGLGN GLVHPSNLQG GNNGRGGFFY SHGLGFGPFG QGQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-31M-type_MADS family protein