PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023917068.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family M-type_MADS
Protein Properties Length: 267aa    MW: 30623.2 Da    PI: 10.3113
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023917068.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.61.1e-151050242
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    +i n+s r+ tf kR++g+lKK +ELS+LC+++   ii+s+
  XP_023917068.1 10 FITNDSTRKATFKKRKKGLLKKVSELSTLCGIKSRAIIYSP 50
                    89*************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    
MTRKKVKLAF ITNDSTRKAT FKKRKKGLLK KVSELSTLCG IKSRAIIYSP YDSQPEVWAS  60
EHGIQHVLGL FKNMPEMEQT KKMVNQESFL RQRIAKANEQ LKKQQKDNRE KEMTEVMFQS  120
LTGKGLHNLT MMDLNDLGWL IDQNLKNIYR RIGQLNKVAQ KQVQGEPAAA KTEGMVVGST  180
STGTTPSEMN NVQQPHDHHQ RTPGFEMNMD TMQRQQWFMD MMNLPQENNM GFGGDEMMLP  240
FGDNSHNALW SNASSLDLKK KKNLKES
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKLAFITNDSTRKATFKKRK
22226KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.16e-57M-type_MADS family protein