PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023917856.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

YABBY

Protein Properties

Length: 171aa MW: 18933.4 Da PI: 8.9047

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023917856.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	152.3	4.3e-47	10	155	2	163
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 d + se++Cyv+CnfCnt+lav +P++ l+ +vtv+CGhC++l ++ + +q + + l +l+e++++ +++++ + ++s+s+s XP_023917856.1 10 DSVPPSEHLCYVRCNFCNTVLAVGIPFKRLLDTVTVKCGHCSNLSFISTRPPVQGQCPDHSL------SLQEKQGFC-NDFRKVH--SSSSSSS- 94 667899***********************************8776555554443333222......233333322.2232222..2222222. PP YABBY 97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163 ++++ +p++p v++PPek+ r Psaynrf+keeiqrika+nP+i hreafs+aaknWa + XP_023917856.1 95 ------TSSEPLSPKAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSTAAKNWARY 155 ......334556799999*********************************************76 PP

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence
MNLEDKVSMD SVPPSEHLCY VRCNFCNTVL AVGIPFKRLL DTVTVKCGHC SNLSFISTRP 60 PVQGQCPDHS LSLQEKQGFC NDFRKVHSSS SSSSTSSEPL SPKAPFVVKP PEKKHRLPSA 120 YNRFMKEEIQ RIKAANPEIP HREAFSTAAK NWARYIPNSP AGSVSGSNNN E

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69180.1	7e-69	YABBY family protein