PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023917857.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

YABBY

Protein Properties

Length: 168aa MW: 18548 Da PI: 8.9074

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023917857.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	146.8	2.2e-45	10	152	2	163
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 d + se++Cyv+CnfCnt+lav +P++ l+ +vtv+CGhC++l ++ + +q + +h l +++ +++++ +++s+s+s XP_023917857.1 10 DSVPPSEHLCYVRCNFCNTVLAVGIPFKRLLDTVTVKCGHCSNLSFISTRPPVQGQCP-DH--------SLSLQGF-CNDFRKV--HSSSSSSS- 91 667899**********************************9866444433332222.22........2222222.2222222..22222222. PP YABBY 97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163 ++++ +p++p v++PPek+ r Psaynrf+keeiqrika+nP+i hreafs+aaknWa + XP_023917857.1 92 ------TSSEPLSPKAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSTAAKNWARY 152 ......334556799999*********************************************76 PP

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence
MNLEDKVSMD SVPPSEHLCY VRCNFCNTVL AVGIPFKRLL DTVTVKCGHC SNLSFISTRP 60 PVQGQCPDHS LSLQGFCNDF RKVHSSSSSS STSSEPLSPK APFVVKPPEK KHRLPSAYNR 120 FMKEEIQRIK AANPEIPHRE AFSTAAKNWA RYIPNSPAGS VSGSNNNE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69180.1	5e-68	YABBY family protein