PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023917960.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family MIKC_MADS
Protein Properties Length: 232aa    MW: 26958.4 Da    PI: 10.0392
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023917960.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF1009.3e-322474151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+
  XP_023917960.1 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 74
                    79***********************************************95 PP
2K-box106.82.6e-35931886100
           K-box   6 gks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     +   ++e +a+ +qqe++kL+++i+++q+ +Rh++Ge L+s+++keL++Le +Lek+++++R+kKne+ll++ie +qk+e elq+en++Lr+k++
  XP_023917960.1  93 NPGsVAEINAQFYQQESSKLRRQIREIQNLNRHIVGEALSSMTFKELKNLEGRLEKGITRVRTKKNEMLLAEIEFMQKREVELQNENNYLRAKIA 187
                     33359999*************************************************************************************98 PP

           K-box 100 e 100
                     e
  XP_023917960.1 188 E 188
                     6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    
MEFPNQALEG SSQRKIGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL  60
IVFSSRGRLY EYSNNSVRGT INRYKKVSTE SSNPGSVAEI NAQFYQQESS KLRRQIREIQ  120
NLNRHIVGEA LSSMTFKELK NLEGRLEKGI TRVRTKKNEM LLAEIEFMQK REVELQNENN  180
YLRAKIAENE RAQQQQGTNL MPETVYESVS SQTYDRNYLP ANLLESNHHY SR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.11e-105MIKC_MADS family protein