PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023918117.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 570aa MW: 63468.1 Da PI: 8.0318

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023918117.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00088	484	506	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C k+F++ L H r+H XP_023918117.1 484 HECPICLKVFPSGQALGGHKRSH 506 79******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 570 aa Download sequence
MKCDYNSMEE VQEFKYMCKF CSKTFPCGRS LGGHMRSHLT NNSAEKDKKL SKTKLSPFKK 60 GRKHTNAELG VEPETQAGYG LRENPKKTKR LADSSENTFS LYNRFCKECG KEFQSWKALF 120 GHMKCHSEKE KGSSSLDDQD SWTSANQKLV IDSQSDNETT APNKKRRSER RTTRYMAAAT 180 SSSLSFANAS SSVSEIEQEQ EEVAMCLMML SRDVGHWGGL NSAAESSDNN SVYLEAPESF 240 QTNLISKTVG KTSVFNGNKI FQVKKLSDKK LELGNLDFED VQGKESEFCA PGNSRTLPRM 300 IETEVSTDGI FKNDMMKKSQ IDDQLGFEDS EVKLGKVFSK ETASDQAQLA SVKCNSSKKK 360 VRNSYDPELY SDPLKKLNTN DMDSEFSKSS HKRSKFECTT CNKVFHSYQA LGGHRASHKK 420 IKGCFATRIE GSENSIETEL SLDPSADSKL IKSGYNEKPT EQDRVAVCDV KTDTGIGSKK 480 SNGHECPICL KVFPSGQALG GHKRSHLVAV SEARNNPTLV IQKPVPEIQD FLDLNLPAPV 540 EEENNGHVGF TPWWVGSTHK HEALVSLTSN

Sequence ? help Back to Top

Protein Sequence Length: 570 aa Download sequence

MKCDYNSMEE VQEFKYMCKF CSKTFPCGRS LGGHMRSHLT NNSAEKDKKL SKTKLSPFKK  60
GRKHTNAELG VEPETQAGYG LRENPKKTKR LADSSENTFS LYNRFCKECG KEFQSWKALF  120
GHMKCHSEKE KGSSSLDDQD SWTSANQKLV IDSQSDNETT APNKKRRSER RTTRYMAAAT  180
SSSLSFANAS SSVSEIEQEQ EEVAMCLMML SRDVGHWGGL NSAAESSDNN SVYLEAPESF  240
QTNLISKTVG KTSVFNGNKI FQVKKLSDKK LELGNLDFED VQGKESEFCA PGNSRTLPRM  300
IETEVSTDGI FKNDMMKKSQ IDDQLGFEDS EVKLGKVFSK ETASDQAQLA SVKCNSSKKK  360
VRNSYDPELY SDPLKKLNTN DMDSEFSKSS HKRSKFECTT CNKVFHSYQA LGGHRASHKK  420
IKGCFATRIE GSENSIETEL SLDPSADSKL IKSGYNEKPT EQDRVAVCDV KTDTGIGSKK  480
SNGHECPICL KVFPSGQALG GHKRSHLVAV SEARNNPTLV IQKPVPEIQD FLDLNLPAPV  540
EEENNGHVGF TPWWVGSTHK HEALVSLTSN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	3e-63	C2H2 family protein