PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023918183.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family GRAS
Protein Properties Length: 449aa    MW: 50072.8 Da    PI: 6.4169
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023918183.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS416.22.8e-127474483373
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaal............... 81 
                     +lL++cAe +s +d+++a++l++ ls+++s +g++++Rl++ f++AL+ rl++ s+s+ ++a  p + +++ s  +++a+               
  XP_023918183.1  47 QLLIRCAELISRSDFSAAHRLISILSTNSSLYGESTERLVHQFAKALSLRLNNfSSSSGASAAGPVAINTSASLASTSAVvtraatsissnidin 141
                     89***************************************************8666666666666666666555555556788999******** PP

            GRAS  82 .................klfsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeel 158
                                        +++++P+l+fshltaNqaIlea+++  +++Hi+Dfdi++GlQWp+L+qaLa+R+ +pp+lRiT+ g+    + + l
  XP_023918183.1 142 adteimsesddslqscyLSLNQITPFLRFSHLTANQAILEAIDEGqQAIHILDFDIMHGLQWPPLMQALAERSYPPPMLRITATGN----DPNIL 232
                     ***********99875444***********************75449***************************************....9**** PP

            GRAS 159 eetgerLakfAeelgvpfefnvl..vakrledl.eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250
                     ++tg+rL+kfA++lg++f+f++l  v+++++++ ++ +L+++p+Eala+n+vl lh+ll+e+       + +L+ +k l+Pkvv+++eqea+hn+
  XP_023918183.1 233 HRTGDRLSKFAQTLGLRFQFHPLliVSNDINCIiDPLSLALHPDEALAINCVLYLHKLLKEDSRGL---RLFLHKIKALNPKVVTIAEQEANHNH 324
                     **********************98777899887699***********************6665555...59************************ PP

            GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk 345
                     + Fl+r+leal++y+++fdslea+lp++s+er  vE++++greiv++va+eg +rrerh+++e W+ +l+++GF++v+ls +a +qaklllr ++
  XP_023918183.1 325 PVFLQRILEALDHYTSVFDSLEATLPPNSRERLAVEQVWFGREIVDIVAAEGVNRRERHQRYEAWEVMLRSSGFSNVSLSPFALSQAKLLLRLHY 419
                     *********************************************************************************************** PP

            GRAS 346 .sdgyrveeesgslvlgWkdrpLvsvSaW 373
                      s+gy+++ +++sl+lgW++r+L+svS+W
  XP_023918183.1 420 pSEGYKLQIRNDSLFLGWQNRALFSVSSW 448
                     ***************************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    
MFIGSFSSSH HDQQAEDQED PISSSDLQFI PANPSQPPLP NAIRMPQLLI RCAELISRSD  60
FSAAHRLISI LSTNSSLYGE STERLVHQFA KALSLRLNNF SSSSGASAAG PVAINTSASL  120
ASTSAVVTRA ATSISSNIDI NADTEIMSES DDSLQSCYLS LNQITPFLRF SHLTANQAIL  180
EAIDEGQQAI HILDFDIMHG LQWPPLMQAL AERSYPPPML RITATGNDPN ILHRTGDRLS  240
KFAQTLGLRF QFHPLLIVSN DINCIIDPLS LALHPDEALA INCVLYLHKL LKEDSRGLRL  300
FLHKIKALNP KVVTIAEQEA NHNHPVFLQR ILEALDHYTS VFDSLEATLP PNSRERLAVE  360
QVWFGREIVD IVAAEGVNRR ERHQRYEAWE VMLRSSGFSN VSLSPFALSQ AKLLLRLHYP  420
SEGYKLQIRN DSLFLGWQNR ALFSVSSWH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-125GRAS family protein