PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023918807.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

bHLH

Protein Properties

Length: 513aa MW: 57051.1 Da PI: 6.5056

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023918807.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.9	4.7e-05	407	441	16	55
HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 i +++ L++++ + +K + a++L +A++YIk Lq XP_023918807.1 407 IGDRITALQQIVSPF-----GKTDTASVLFEAIQYIKFLQ 441 678999999999998.....8******************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence
MCEKERDMAE ECIESSVATS SSTPTNWWDI PGASSLPAWN NNPNSWHHQN PNSNSSCEED 60 VSISTSFTNA SNHSGLTVES SRRLAEPASS NDLIGEHASD NNLWSHVLLS VGSNGGLQNN 120 QDVEENFVDA LSSKSMSTGM FQPACDYLKK LDNSWEFTNS TSFNNFEKHI NGFNDSVLDN 180 ERLNKLSNLV STWSIAPPDP DVNRQFDPQT CNISLSSSMD HYSQPDLCHM KHAFSDSTSC 240 DLGTTRNCSL FPCYSHDMKV ENERRETEAP VALLRRSFNN NGVGYQIGIN SSLMGDNPRS 300 YFYGMPNSSS CRSIKSFADV ISFSNRMGKP LMDIHAPNNC FKSLNTSDYK KQGLQTSMTR 360 NNGKGQAIAN EGKRKRSEDG SESALKKPKQ ESPTASSVKV QAPKVKIGDR ITALQQIVSP 420 FGKTDTASVL FEAIQYIKFL QEQVQLLTNP YMKTNSHKDP WGGLDRKDKG DTKLDLRSRG 480 LCLVPTSCTP QIYRENTGSD YWSTPTYRGS LYR

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence

MCEKERDMAE ECIESSVATS SSTPTNWWDI PGASSLPAWN NNPNSWHHQN PNSNSSCEED  60
VSISTSFTNA SNHSGLTVES SRRLAEPASS NDLIGEHASD NNLWSHVLLS VGSNGGLQNN  120
QDVEENFVDA LSSKSMSTGM FQPACDYLKK LDNSWEFTNS TSFNNFEKHI NGFNDSVLDN  180
ERLNKLSNLV STWSIAPPDP DVNRQFDPQT CNISLSSSMD HYSQPDLCHM KHAFSDSTSC  240
DLGTTRNCSL FPCYSHDMKV ENERRETEAP VALLRRSFNN NGVGYQIGIN SSLMGDNPRS  300
YFYGMPNSSS CRSIKSFADV ISFSNRMGKP LMDIHAPNNC FKSLNTSDYK KQGLQTSMTR  360
NNGKGQAIAN EGKRKRSEDG SESALKKPKQ ESPTASSVKV QAPKVKIGDR ITALQQIVSP  420
FGKTDTASVL FEAIQYIKFL QEQVQLLTNP YMKTNSHKDP WGGLDRKDKG DTKLDLRSRG  480
LCLVPTSCTP QIYRENTGSD YWSTPTYRGS LYR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	373	389	KRKRSEDGSESALKKPK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31050.1	4e-71	bHLH family protein