PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023918808.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

bHLH

Protein Properties

Length: 512aa MW: 56998 Da PI: 6.5056

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023918808.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.9	4.7e-05	406	440	16	55
HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 i +++ L++++ + +K + a++L +A++YIk Lq XP_023918808.1 406 IGDRITALQQIVSPF-----GKTDTASVLFEAIQYIKFLQ 440 678999999999998.....8******************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence
MCEKERDMAE ECIESSVATS SSTPTNWWDI PGASSLPAWN NNPNSWHHQN PNSNSSCEED 60 VSISTSFTNA SNHSGLTVES SRRLAEPASS NDLIGEHASD NNLWSHVLFV GSNGGLQNNQ 120 DVEENFVDAL SSKSMSTGMF QPACDYLKKL DNSWEFTNST SFNNFEKHIN GFNDSVLDNE 180 RLNKLSNLVS TWSIAPPDPD VNRQFDPQTC NISLSSSMDH YSQPDLCHMK HAFSDSTSCD 240 LGTTRNCSLF PCYSHDMKVE NERRETEAPV ALLRRSFNNN GVGYQIGINS SLMGDNPRSY 300 FYGMPNSSSC RSIKSFADVI SFSNRMGKPL MDIHAPNNCF KSLNTSDYKK QGLQTSMTRN 360 NGKGQAIANE GKRKRSEDGS ESALKKPKQE SPTASSVKVQ APKVKIGDRI TALQQIVSPF 420 GKTDTASVLF EAIQYIKFLQ EQVQLLTNPY MKTNSHKDPW GGLDRKDKGD TKLDLRSRGL 480 CLVPTSCTPQ IYRENTGSDY WSTPTYRGSL YR

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence

MCEKERDMAE ECIESSVATS SSTPTNWWDI PGASSLPAWN NNPNSWHHQN PNSNSSCEED  60
VSISTSFTNA SNHSGLTVES SRRLAEPASS NDLIGEHASD NNLWSHVLFV GSNGGLQNNQ  120
DVEENFVDAL SSKSMSTGMF QPACDYLKKL DNSWEFTNST SFNNFEKHIN GFNDSVLDNE  180
RLNKLSNLVS TWSIAPPDPD VNRQFDPQTC NISLSSSMDH YSQPDLCHMK HAFSDSTSCD  240
LGTTRNCSLF PCYSHDMKVE NERRETEAPV ALLRRSFNNN GVGYQIGINS SLMGDNPRSY  300
FYGMPNSSSC RSIKSFADVI SFSNRMGKPL MDIHAPNNCF KSLNTSDYKK QGLQTSMTRN  360
NGKGQAIANE GKRKRSEDGS ESALKKPKQE SPTASSVKVQ APKVKIGDRI TALQQIVSPF  420
GKTDTASVLF EAIQYIKFLQ EQVQLLTNPY MKTNSHKDPW GGLDRKDKGD TKLDLRSRGL  480
CLVPTSCTPQ IYRENTGSDY WSTPTYRGSL YR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	372	388	KRKRSEDGSESALKKPK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31050.1	5e-72	bHLH family protein