PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023919048.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family M-type_MADS
Protein Properties Length: 215aa    MW: 24137.4 Da    PI: 9.5286
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023919048.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.57.2e-181661247
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                     i+ +s r vtfskRr gi KKA+EL +LC+ae+ +++fss gk +
  XP_023919048.1 16 IIDKESDRMVTFSKRRSGINKKASELVTLCGAEIGMVVFSSAGKPF 61
                    69999*************************************9855 PP
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    
MEGKKTKGRQ KIEMKIIDKE SDRMVTFSKR RSGINKKASE LVTLCGAEIG MVVFSSAGKP  60
FSFGHPSVES VANRFLQQNP PQSQVDNTCP LMEAQWRLRI NELNQQCDEL FRQLEAEKKR  120
EKVLQELKKA RGSNGWWEVP TKELNFQQLQ QMNESLKEFH KNLCTSMKEK VIAGLPSSSS  180
SSTFLADSSA QGAIPFAPND SGTNPSSFPP VYGYN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-45M-type_MADS family protein