PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023919070.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

M-type_MADS

Protein Properties

Length: 217aa MW: 24125.2 Da PI: 9.3104

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023919070.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	61.1	1.3e-19	15	61	1	47
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 k+ien+ r +tfskRr gi KKA+EL +LC+aev v+ifs+ gk + XP_023919070.1 15 KKIENEDDRLITFSKRRSGIYKKASELVTLCGAEVGVVIFSPAGKPF 61 68*****************************************9855 PP

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence
MEGKKTKGRQ KIEMKKIENE DDRLITFSKR RSGIYKKASE LVTLCGAEVG VVIFSPAGKP 60 FSFGHPSVES VANRFLRQNP LPGQGDNTHP LVEAHRRVRI NELNQQYNEL LSLLEAEKDQ 120 GKALQKLTKA RGNKGWWEVP TEELGYQELK QMNAQLEELH KNLCNHMKEK AFAGGALPSS 180 STYFPGNSSQ GSIPFNPNAS DADPTLHPGY GYGPGNF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	1e-50	M-type_MADS family protein