PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023919076.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family M-type_MADS
Protein Properties Length: 175aa    MW: 19494.5 Da    PI: 10.5498
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023919076.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.33.7e-221053245
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                     ++++s rqvtfskRr+g++KKA+EL +LC+aeva+++fs+ gk
  XP_023919076.1 10 MVKDNSSRQVTFSKRRTGLFKKANELATLCGAEVAIVVFSPGGK 53
                    67899************************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    
MGRRKIEMKM VKDNSSRQVT FSKRRTGLFK KANELATLCG AEVAIVVFSP GGKPFSFGHP  60
TVDSVSDRFL NQDQEVPNVK ARAGSSKNAK VDRLNQQLVD VMKRLQAEKK KAQSLDQKAK  120
KAKAPQNCQT QIDELSLHEL EKLKGSLEEL RENVKARACE MEASSSLLLL AQKPI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.18e-40M-type_MADS family protein