PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023919207.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 1121aa MW: 125168 Da PI: 8.0509

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023919207.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.7	1.3e-08	435	479	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++WTt Ed+ l+ +v++ G +W Ia +g+ Rt+ qc r+q XP_023919207.1 435 NPWTTMEDKNLLLLVQEKGIINWFDIAVSLGTDRTPFQCLARYQR 479 69*****************************************96 PP
2	Myb_DNA-binding	39.1	1.7e-12	487	531	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+WT++Ed +l av+ +G +W ++a+t+ gR + qc +rw k XP_023919207.1 487 KGAWTKDEDAQLCAAVEVFGESDWQSVASTLE-GRAGTQCSNRWKK 531 79****************************.*********98 PP
3	Myb_DNA-binding	48.5	2e-15	541	584	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 grW ++Ed++l+ av ++G+++W++Ia+ ++ gRt qc++rw + XP_023919207.1 541 GRWIEDEDKRLKVAVMLFGPKNWNKIAQFVP-GRTQVQCRERWVN 584 89***************************.*********87 PP
4	Myb_DNA-binding	49.4	1.1e-15	594	637	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT+eEd +l+ a++++G W+++a++++ Rt++qc+ rw +l XP_023919207.1 594 EWTEEEDSKLKAAIAEHGYC-WAKVAACVP-PRTDNQCRRRWKVLL 637 6***************99.*****.9********9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 1121 aa Download sequence
MSPRTDQEKA EFTDDDNDDD DDVLDDDIEA LRRACMITGE NPNDLINNNN NNNNNNPSPS 60 LFSAAAGDDD SDDDLELVRS IQNRFSNSDT LSLKPLCTLP PMASDDDEDD LETLRAIQQR 120 FAAYDSDTLK QGIGFGGSLS KPQQQVDASS LSLEKETSNN LIVHRTNSSE GFTDSEDFCN 180 THPLSENLGI QPSSFVENHQ PGASKSPMLP LKKSSFPKSA LLLMDAIKKN RSSQKFIRSQ 240 LVNLEARIEE NKKLKERVKI LKDFQASCKK RTGRALSQRK DPRVQLISVK KSLVSKDSKV 300 NDKRVHAMYY GPAENSHVTN YRMALTTFPL SLERKKWSKA ERENLGKGIR QQFQEMVLQI 360 SVDQLSDLDG SCGDSNDFDK ILVSIKDLEV TPENLREFLP KVNWEQLASM YVVGRSGAEC 420 EVRWLNYEDP LINHNPWTTM EDKNLLLLVQ EKGIINWFDI AVSLGTDRTP FQCLARYQRS 480 LNASILKGAW TKDEDAQLCA AVEVFGESDW QSVASTLEGR AGTQCSNRWK KSLHPARERV 540 GRWIEDEDKR LKVAVMLFGP KNWNKIAQFV PGRTQVQCRE RWVNSLDPSL SWSEWTEEED 600 SKLKAAIAEH GYCWAKVAAC VPPRTDNQCR RRWKVLLPHE VPMLKEARRI QKAALISNFV 660 DREVERPALG PSDFLPLPMI GSISEPENKN SCSKQKGRLR GKATSKEKKN AASCNVPRKN 720 RFKKCEQQSQ VCSGTIEKKK HPKPCSKRKK CIKPVADNQS LVLLPESLES GTTNGECVEA 780 AIDNNSTSNK KTSKHCSRRI KCTTDLGGNQ NAMLSSAKSM LSGITNDEHP LDHVSCPDST 840 LLPITNGEVV DSMNEHVRTG KQRPTKLQSK RKKCMELAED SHSFSSHPES GEFGKTDGEG 900 VESSILDMGK GAVKQQKRRK IRNEPSGKCQ DVSVLFQQDK LEVSKHRNIS SKQILGATNG 960 DDVTLACFLH NKPKKRRLEV AKNTSQACSS SSPKKGVESL SNVADKLKYG NQNLSTTQDK 1020 ESQAFCLGGN PDDLLPCKLS SHLVDKPTMI DSDNGPDRKD LVQGQHTAHD PVSFSPEGDC 1080 EEDGDITLAC LLQNKLKKKK GSKSISRVNR HNDGNPSNMQ G

Sequence ? help Back to Top

Protein Sequence Length: 1121 aa Download sequence

MSPRTDQEKA EFTDDDNDDD DDVLDDDIEA LRRACMITGE NPNDLINNNN NNNNNNPSPS  60
LFSAAAGDDD SDDDLELVRS IQNRFSNSDT LSLKPLCTLP PMASDDDEDD LETLRAIQQR  120
FAAYDSDTLK QGIGFGGSLS KPQQQVDASS LSLEKETSNN LIVHRTNSSE GFTDSEDFCN  180
THPLSENLGI QPSSFVENHQ PGASKSPMLP LKKSSFPKSA LLLMDAIKKN RSSQKFIRSQ  240
LVNLEARIEE NKKLKERVKI LKDFQASCKK RTGRALSQRK DPRVQLISVK KSLVSKDSKV  300
NDKRVHAMYY GPAENSHVTN YRMALTTFPL SLERKKWSKA ERENLGKGIR QQFQEMVLQI  360
SVDQLSDLDG SCGDSNDFDK ILVSIKDLEV TPENLREFLP KVNWEQLASM YVVGRSGAEC  420
EVRWLNYEDP LINHNPWTTM EDKNLLLLVQ EKGIINWFDI AVSLGTDRTP FQCLARYQRS  480
LNASILKGAW TKDEDAQLCA AVEVFGESDW QSVASTLEGR AGTQCSNRWK KSLHPARERV  540
GRWIEDEDKR LKVAVMLFGP KNWNKIAQFV PGRTQVQCRE RWVNSLDPSL SWSEWTEEED  600
SKLKAAIAEH GYCWAKVAAC VPPRTDNQCR RRWKVLLPHE VPMLKEARRI QKAALISNFV  660
DREVERPALG PSDFLPLPMI GSISEPENKN SCSKQKGRLR GKATSKEKKN AASCNVPRKN  720
RFKKCEQQSQ VCSGTIEKKK HPKPCSKRKK CIKPVADNQS LVLLPESLES GTTNGECVEA  780
AIDNNSTSNK KTSKHCSRRI KCTTDLGGNQ NAMLSSAKSM LSGITNDEHP LDHVSCPDST  840
LLPITNGEVV DSMNEHVRTG KQRPTKLQSK RKKCMELAED SHSFSSHPES GEFGKTDGEG  900
VESSILDMGK GAVKQQKRRK IRNEPSGKCQ DVSVLFQQDK LEVSKHRNIS SKQILGATNG  960
DDVTLACFLH NKPKKRRLEV AKNTSQACSS SSPKKGVESL SNVADKLKYG NQNLSTTQDK  1020
ESQAFCLGGN PDDLLPCKLS SHLVDKPTMI DSDNGPDRKD LVQGQHTAHD PVSFSPEGDC  1080
EEDGDITLAC LLQNKLKKKK GSKSISRVNR HNDGNPSNMQ G

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.1	0.0	MYB family protein