PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023919312.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family GRAS
Protein Properties Length: 793aa    MW: 86625.6 Da    PI: 6.3473
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023919312.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS413.81.5e-1264247812374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      +lLl+cAeavs++++e+a+++L ++sel++p g++ qR+aayf eA++arl++s+ ++y +lp s  s   s++ ++a+++f+ +sP++kfsh+
  XP_023919312.1 424 LTLLLQCAEAVSADNFEEANNMLLEISELSTPFGTAAQRVAAYFSEAMSARLVSSCLGIYGSLPNSGHS--YSQKMASAFQVFNGISPLVKFSHF 516
                     579************************************************************999887..5999999***************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                     taNqaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g     s ++le+tg+rL++fAe+lg+pfef + +a++  +l++
  XP_023919312.1 517 TANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPRGPPYVRLTGLGT----SMDALEATGKRLSDFAEKLGLPFEFIP-LADKPGNLDP 606
                     *****************************************************....***************************.6********* PP

            GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                     e+L+v+++Ea+aV++    h+l+d ++s ++    +L+l+++l Pkvv+vveq+++h ++sFl rf+ea++yysalfdsl a++++eseer++vE
  XP_023919312.1 607 ERLNVSKREAVAVHWLQ--HSLYDVTGSDTN----MLWLLQRLAPKVVTVVEQDLSH-AGSFLGRFVEAIHYYSALFDSLGASYGEESEERHVVE 694
                     ****************9..999999999999....**********************.899********************************** PP

            GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++ll+rei+nv+a  g +r  + + +++Wre+l+++GFkp++l  +aa+qa lll +++sdgy++ e++g+l lgWkd  L+++SaWr
  XP_023919312.1 695 QQLLSREIRNVLAVGGPSRSGEVK-FHNWREKLQQCGFKPLSLAGNAATQATLLLGMFPSDGYTLVEDNGTLKLGWKDLCLLTASAWR 781
                     ******************888776.**************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 793 aa     Download sequence    
MTACTWLDVD VNGGNNSNKN TDNNSPLTTS ASNNNNNSSS RRTRCYEEQP RNHRHHQLSN  60
GKMLRKRMAS EIEVDVQTST ICTDPDTNKN NDYIRFARRA GSNTTVNGSS SSFQGAGNNN  120
HVGSVDNFPA IPNPSQTNNY STMLPSATTD LTSMTSGGGF LSCVTPPNLS PAAQPQPQIS  180
TTPAAVSVSV CGFSGLPLFP SETSQNTSNN TTTNINSNSN RSSSRSLPNN NNNNKASVCG  240
VSMEDGSAWI DGIIKDLIHS SNNVSIPQLI QNVREIIFPC NPNLAAVLEY RLRSLTSADP  300
IPNYVPAAAE LRRSRTTVVQ QQAGQQTPLL PVSTTSEAMN QLYLHWGVTP LPTASPNPTV  360
QVQLQEEQQQ QENSSPPDTA ILMPSTTTTT TNSATTPTNI VHTSREKKEE MRQQKRDEQG  420
LHLLTLLLQC AEAVSADNFE EANNMLLEIS ELSTPFGTAA QRVAAYFSEA MSARLVSSCL  480
GIYGSLPNSG HSYSQKMASA FQVFNGISPL VKFSHFTANQ AIQEAFEREE RVHIIDLDIM  540
QGLQWPGLFH ILASRPRGPP YVRLTGLGTS MDALEATGKR LSDFAEKLGL PFEFIPLADK  600
PGNLDPERLN VSKREAVAVH WLQHSLYDVT GSDTNMLWLL QRLAPKVVTV VEQDLSHAGS  660
FLGRFVEAIH YYSALFDSLG ASYGEESEER HVVEQQLLSR EIRNVLAVGG PSRSGEVKFH  720
NWREKLQQCG FKPLSLAGNA ATQATLLLGM FPSDGYTLVE DNGTLKLGWK DLCLLTASAW  780
RPPFPATTST HHY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein