PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023919357.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family GRAS
Protein Properties Length: 224aa    MW: 24455.6 Da    PI: 5.6337
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023919357.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS168.45.8e-52682213160
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                      lLl+cAe+vs ++l  a+ lL ++ el+sp+g++ qR+ a+f+ AL+ar+  s+ ++y+ l++++ + +++++ ++al+ ++ +sP++kfsh+t
  XP_023919357.1  68 GLLLQCAECVSMQNLDDATDLLPEIAELSSPYGSSPQRVGAFFAHALQARVITSCLGIYSPLSSKTLTLTQTQKIFSALQSYNSISPLIKFSHFT 162
                     58********************************************************************************************* PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeelee 160
                     aNqaI +a++ge+rvH+iD+di+qGlQWp L++ LasR+++  s+R+Tg+gs    s+e l +
  XP_023919357.1 163 ANQAIFQALDGEDRVHVIDLDIMQGLQWPGLFHILASRNKKIRSMRVTGFGS----SSELLDS 221
                     ***************************************************9....5555554 PP
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    
MLQSLVPQSP ISNMNPKRVD RDDSSGDEAT TATKRRNLSD EASVSGEKAL VEEPHRDESE  60
SSGLRLLGLL LQCAECVSMQ NLDDATDLLP EIAELSSPYG SSPQRVGAFF AHALQARVIT  120
SCLGIYSPLS SKTLTLTQTQ KIFSALQSYN SISPLIKFSH FTANQAIFQA LDGEDRVHVI  180
DLDIMQGLQW PGLFHILASR NKKIRSMRVT GFGSSSELLD STGK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.14e-71GRAS family protein