PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023919370.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family GRAS
Protein Properties Length: 433aa    MW: 47236.8 Da    PI: 5.59
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023919370.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS366.44e-112684303374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                      lLl+cAe+vs ++l  a+ lL ++ el+sp+g++ qR+ a+f+ AL+ar+  s+ ++y+ l++++ + +++++ ++al+ ++ +sP++kfsh+t
  XP_023919370.1  68 GLLLQCAECVSMQNLDDATDLLPEIAELSSPYGSSPQRVGAFFAHALQARVITSCLGIYSPLSSKTLTLTQTQKIFSALQSYNSISPLIKFSHFT 162
                     58********************************************************************************************* PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl.el 191
                     aNqaI +a++ge+rvH+iD+di+qGlQWp L++ LasR+++  s+R+Tg+gs    s+e l +tg+rLa+fA++lg+pfef+++ + ++ +l ++
  XP_023919370.1 163 ANQAIFQALDGEDRVHVIDLDIMQGLQWPGLFHILASRNKKIRSMRVTGFGS----SSELLDSTGKRLADFATSLGLPFEFQPV-EGKIGNLkDP 252
                     ****************************************************....99*************************6.555555549* PP

            GRAS 192 eeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseeri 283
                     ++L ++p  gEa++V++++  h l+d ++s        L+l+  l+Pk++++veq+++h ++ Fl+rf++al+yysalfd+l   +l+ +s er+
  XP_023919370.1 253 SQLGLRPseGEAIVVHWMH--HCLYDITGSDLG----ALRLLTMLRPKLITIVEQDLSH-GGGFLARFVDALHYYSALFDALgGDGLGGDSIERH 340
                     ****99999********99..777777777777....9*********************.678*******************999********** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +vE++l+g ei+n+va  g +r+  +e++e+W + l+++GF pv+l  + a+qa+lll +++++gy++ ee+g+l lgWkd +L+++SaW+
  XP_023919370.1 341 MVEQQLFGCEIRNIVAVGGPKRTG-EEKVERWGHELGRVGFCPVSLAGNPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLSLLTASAWQ 430
                     ********************9665.577**************************************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    
MLQSLVPQSP ISNMNPKRVD RDDSSGDEAT TATKRRNLSD EASVSGEKAL VEELHRDESE  60
SSGLRLLGLL LQCAECVSMQ NLDDATDLLP EIAELSSPYG SSPQRVGAFF AHALQARVIT  120
SCLGIYSPLS SKTLTLTQTQ KIFSALQSYN SISPLIKFSH FTANQAIFQA LDGEDRVHVI  180
DLDIMQGLQW PGLFHILASR NKKIRSMRVT GFGSSSELLD STGKRLADFA TSLGLPFEFQ  240
PVEGKIGNLK DPSQLGLRPS EGEAIVVHWM HHCLYDITGS DLGALRLLTM LRPKLITIVE  300
QDLSHGGGFL ARFVDALHYY SALFDALGGD GLGGDSIERH MVEQQLFGCE IRNIVAVGGP  360
KRTGEEKVER WGHELGRVGF CPVSLAGNPA AQASLLLGMF PWKGYTLVEE NGCLKLGWKD  420
LSLLTASAWQ PVD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-171GRAS family protein