PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023919892.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MIKC_MADS

Protein Properties

Length: 251aa MW: 29233.2 Da PI: 7.2162

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023919892.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	82.2	3.4e-26	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +rien + rqvtf+kRr g++KK +ELSvLCda++ +++fss+gklyey+s XP_023919892.1 9 SRIENRTTRQVTFAKRRVGLFKKTHELSVLCDAQIGIMVFSSSGKLYEYCS 59 59***********************************************96 PP
2	K-box	61.5	3.3e-21	76	167	6	96
K-box 6 gks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 g++ e++ + +q el+++++e+ +L+ ++ ++ GedL+s ++ +L++Leq+Le++++k+R++ ell +qi++l++k k+l++en++L + XP_023919892.1 76 GTDqIPESNDQLMQGELKRMQRETLSLELSLQRYTGEDLNSVQFGDLHELEQKLENAVNKVRERMFELLQQQIDNLRRKGKMLHDENENLYH 167 455578999********************************************************************************965 PP

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence
MGRRRVSISR IENRTTRQVT FAKRRVGLFK KTHELSVLCD AQIGIMVFSS SGKLYEYCSD 60 TSGMEHIIRR YKIATGTDQI PESNDQLMQG ELKRMQRETL SLELSLQRYT GEDLNSVQFG 120 DLHELEQKLE NAVNKVRERM FELLQQQIDN LRRKGKMLHD ENENLYHLNQ LKENQVALDH 180 QAALDQHQQM TMVPKASEDR RRVLESFPFS GEEQPSSVLP QATLPPLFNP YRLQPTQPNL 240 QDFSLQLPDY V

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	151	157	LRRKGKM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23260.2	9e-56	MIKC_MADS family protein