PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023920323.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 373aa MW: 42313.8 Da PI: 4.7848

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023920323.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.6	4.5e-16	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++ Ed++l+ ++++G ++W++ ++ g+ R++k+c++rw +yl XP_023920323.1 16 RGPWSPAEDLRLITFIQKHGHDNWRALPKLAGLLRCGKSCRLRWINYL 63 89****************************99**********97 PP
2	Myb_DNA-binding	54	3.8e-17	69	114	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE+e +v++++ +G++ W++Ia++++ gRt++++k+ w+++l XP_023920323.1 69 RGNFTKEEEESIVKLHEAWGNK-WSKIASHLP-GRTDNEIKNVWNTHL 114 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence
MGRGRAPCCD KSQVKRGPWS PAEDLRLITF IQKHGHDNWR ALPKLAGLLR CGKSCRLRWI 60 NYLRPDVKRG NFTKEEEESI VKLHEAWGNK WSKIASHLPG RTDNEIKNVW NTHLKKKLTM 120 KDGNVHGDEL SSITSSSSSS SSSFTSHEKQ NIGGGIEHQS DQVPMDKKPH EECNLTHDFE 180 RIQGSQKEDT NQFSIGKDLM DQSSSSYSSY DSNVSNSSPV DALRPEEQMV SLFDYGEPFD 240 VSNILQEVNK PDVDSVNEIP FEADVDFWNM LDNLDSVMSN EVQHSEVNAC QSSNFEEEGS 300 KKVDENKKWL RYLENELGLD AMEEENKDIS TKDVAQPLVP ENVLVSDIFK PETNPDMGYF 360 ETWPSLPHNS SAF

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence

MGRGRAPCCD KSQVKRGPWS PAEDLRLITF IQKHGHDNWR ALPKLAGLLR CGKSCRLRWI  60
NYLRPDVKRG NFTKEEEESI VKLHEAWGNK WSKIASHLPG RTDNEIKNVW NTHLKKKLTM  120
KDGNVHGDEL SSITSSSSSS SSSFTSHEKQ NIGGGIEHQS DQVPMDKKPH EECNLTHDFE  180
RIQGSQKEDT NQFSIGKDLM DQSSSSYSSY DSNVSNSSPV DALRPEEQMV SLFDYGEPFD  240
VSNILQEVNK PDVDSVNEIP FEADVDFWNM LDNLDSVMSN EVQHSEVNAC QSSNFEEEGS  300
KKVDENKKWL RYLENELGLD AMEEENKDIS TKDVAQPLVP ENVLVSDIFK PETNPDMGYF  360
ETWPSLPHNS SAF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56160.1	3e-73	MYB family protein