PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023920677.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family MYB_related
Protein Properties Length: 233aa    MW: 26146.5 Da    PI: 8.7066
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023920677.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.31.7e-13121165347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT eE+el++++ +++G+g+W++I+r    ++ + q+ s+ qky
   XP_023920677.1 121 PWTSEEHELFLRGLEKFGKGDWRSISRQCVVTKNPTQVASHAQKY 165
                      8**************************9999*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MEPSYFSNSS LCNPSLSCLS RPPQLEYTTE WNFEENKIFE NALAEFDLDC PQLFEKIAIR  60
LPQKTVPQIK KHLEDLSNDI EMIDSGLISV PNFIKTSETN EKKSAPAVER KSGKKRRKGV  120
PWTSEEHELF LRGLEKFGKG DWRSISRQCV VTKNPTQVAS HAQKYFLRLQ NSGAQAQQST  180
LKPSNKTSKE ALMSSTAFAT ATTAVAAANL PAPSVASTSD QFYASFHSYH CRY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113119GKKRRKG
2114118KKRRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.13e-43MYB family protein