PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023920880.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

Trihelix

Protein Properties

Length: 337aa MW: 38772.4 Da PI: 6.1487

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023920880.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	35	3.8e-11	30	105	2	79
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 Wt + l L + + +e + +++ + ++W+ +++++ + + r+ +qC+ kw++l+++y kik++e + +s s + XP_023920880.1 30 WTVKGALILANEYAAVEADCSDALSSYQKWKIIAENCTALDVPRTLNQCRRKWDSLATEYGKIKKWELRS--RSGSYW 105 888888888888999999999**********************************************984..444455 PP

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence
MKKCKMESEE SSQLRASGSR HTRSQAAPEW TVKGALILAN EYAAVEADCS DALSSYQKWK 60 IIAENCTALD VPRTLNQCRR KWDSLATEYG KIKKWELRSR SGSYWSLESE RRRKFGLPED 120 FDYELFKAVD DFMSVRENRS DTEPESDPEA KAEMADVVEE LGSKRQRRRF TSQKSWLEGK 180 PLKCHIKEEP SRRSTEEKPQ KRRLEDPVNS LTEENPQKSC IKGRHQKGHV EEPVENPTEE 240 KPKRSHGKGE TWRSHVEEEE TIGTEAKEQM MVMKLQENAE LINAIVSENV GLGAANVSNV 300 EDYRTDFVRR QGDKLIACLR DIVSTLDQLH GHVQECE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	110	115	ERRRKF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31270.1	6e-70	Trihelix family protein