PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023921060.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family LBD
Protein Properties Length: 148aa    MW: 16001.5 Da    PI: 6.4658
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023921060.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260927.2e-292103197
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C++ Cvl+ ++     p++q ++  +++k+FG+s ++ +++a+pe +r+++++sl++eA+ r+ +Pv G+vg++ +++++++q+
  XP_023921060.1   2 SCNGCRVLRKGCSDTCVLRSCLqwiesPKAQGNAVLFLAKFFGRSDIIAFVSAVPEIQRPALFQSLLFEACGRTVNPVDGSVGLLARGKWHVCQT 96 
                     6********************************************************************************************** PP

          DUF260  91 kaelall 97 
                     +++++l+
  XP_023921060.1  97 AVDTVLA 103
                     *998876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    
MSCNGCRVLR KGCSDTCVLR SCLQWIESPK AQGNAVLFLA KFFGRSDIIA FVSAVPEIQR  60
PALFQSLLFE ACGRTVNPVD GSVGLLARGK WHVCQTAVDT VLAGGTVTPL TEFETLTNGI  120
FHDTTCNPYL PFTAFMQDAQ PSDPALTL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.11e-59LBD family protein