PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023921416.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family SBP
Protein Properties Length: 179aa    MW: 20259.5 Da    PI: 8.8196
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023921416.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.19.3e-4270144276
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                     Cq+e+C adl++ak+yhrrhkvCe hska+vv+v+g++qrfCqqCsrfh+lsefDe+krsCr rLa+hnerrrk 
  XP_023921416.1  70 CQAEKCGADLTDAKRYHRRHKVCELHSKASVVIVAGQRQRFCQQCSRFHDLSEFDEAKRSCRVRLAGHNERRRKV 144
                     *************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    
MEARSFEGKR TFKEKVYKEV EEDVDDDLDE EEGGGEMMSF ADNERKRAVA VFSGKRGTSG  60
GAGGVSPPSC QAEKCGADLT DAKRYHRRHK VCELHSKASV VIVAGQRQRF CQQCSRFHDL  120
SEFDEAKRSC RVRLAGHNER RRKVGYQSKE TQSRQTDDHS GRIQVTIPGN SSYKQLQIR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.12e-30SBP family protein