PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023921418.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family M-type_MADS
Protein Properties Length: 253aa    MW: 29059.3 Da    PI: 9.8974
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023921418.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.81.1e-161150342
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    i n+s r+ tf kR++g+lKK +ELS+LC+++ + ii+s+
  XP_023921418.1 11 ITNDSARKATFKKRKKGLLKKVSELSTLCGIKSCAIIYSP 50
                    89*************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    
MTRKKVKLAY ITNDSARKAT FKKRKKGLLK KVSELSTLCG IKSCAIIYSP YDSQPEVWAS  60
EHGIQHVLGL FKNMPEMEQT KKMVNQESFL RQRIAKANEQ LRKQQKDNRE KEMTEVMFQS  120
LTGKSLHNLT MMDLNDLGWL IDHNLKNIYR RIGQLNKVAQ KGEPAAAKTE GMVVGSTSTS  180
TAPSEMNNVQ QPHDHHQRTP GFEMNMDTMQ RQQWFMDMMN LPQENNMGFG GDEMMLPFGD  240
NSHNALWSNA FFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKLAYITNDSARKATFKKRK
22226KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-62M-type_MADS family protein