PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023921530.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 259aa MW: 29120.2 Da PI: 10.2308

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023921530.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.8	0.0015	89	111	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F L H+r+H XP_023921530.1 89 HECSICGLEFAMGQALGGHMRRH 111 78********************9 PP
2	zf-C2H2	10.8	0.0015	178	200	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F L H+r+H XP_023921530.1 178 HECSICGLEFAMGQALGGHMRRH 200 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence
MAMKRMREDG GMESLDMANC LMLLSHSLET QLKKTSRVDV FECKTCNRQF PSFQALGGHR 60 ASHKRPKLMG EELKERAKTQ NQGNKPKMHE CSICGLEFAM GQALGGHMRR HRAMMDGSFS 120 SATIEKKVPV LKRSNSTRVM CLDLNLTPLE NDLKLLFGKK APQIDFTLMN QGNKPKMHEC 180 SICGLEFAMG QALGGHMRRH RAMMDGSFSS ATIEKKVPVL KRSNSTRVMC LDLNLTPLEN 240 DLKLLFGKKA PQIDFTLMV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37430.1	3e-46	C2H2 family protein