PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023922130.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MIKC_MADS

Protein Properties

Length: 225aa MW: 26087.5 Da PI: 9.6828

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023922130.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	94.4	5.1e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvt+skRrngi+KKA+EL vLCda+v++i+fsstgk++ey s XP_023922130.1 9 KRIENQTNRQVTYSKRRNGIFKKAQELTVLCDAKVSIIMFSSTGKFHEYTS 59 79***********************************************75 PP
2	K-box	82.1	1.2e-27	71	165	1	95
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 yqk+ +++l+++++e +q++l+kLk+ ++ L re+R+++GedL+ Lsl +L++L++++ +sl +R++K++++++q+e+ +kk k+l+e++ +L XP_023922130.1 71 YQKALDTDLWSSHYEIMQENLRKLKEINNRLSREIRQRVGEDLNGLSLDDLRSLQNKVSSSLDIVRARKYHVIKTQTETYKKKVKNLEERHGNLL 165 78889999***********************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence
MGRGKIEIKR IENQTNRQVT YSKRRNGIFK KAQELTVLCD AKVSIIMFSS TGKFHEYTSP 60 SITTKKIYDQ YQKALDTDLW SSHYEIMQEN LRKLKEINNR LSREIRQRVG EDLNGLSLDD 120 LRSLQNKVSS SLDIVRARKY HVIKTQTETY KKKVKNLEER HGNLLLDLRA RLEDPQYGLV 180 DNEGDYESTI ALTNGASNLY AFRLHSSHLD LHHAGGFETE DLRLA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54340.1	3e-79	MIKC_MADS family protein