PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023922131.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MIKC_MADS

Protein Properties

Length: 211aa MW: 24338.5 Da PI: 9.2317

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023922131.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	94.6	4.5e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvt+skRrngi+KKA+EL vLCda+v++i+fsstgk++ey s XP_023922131.1 9 KRIENQTNRQVTYSKRRNGIFKKAQELTVLCDAKVSIIMFSSTGKFHEYTS 59 79***********************************************75 PP
2	K-box	59.5	1.4e-20	71	145	1	75
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellle 75 yqk+ +++l+++++e +q++l+kLk+ ++ L re+R+++GedL+ Lsl +L++L++++ +sl +R++K + l e XP_023922131.1 71 YQKALDTDLWSSHYEIMQENLRKLKEINNRLSREIRQRVGEDLNGLSLDDLRSLQNKVSSSLDIVRARKVKNLEE 145 78889999*************************************************************998876 PP

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence
MGRGKIEIKR IENQTNRQVT YSKRRNGIFK KAQELTVLCD AKVSIIMFSS TGKFHEYTSP 60 SITTKKIYDQ YQKALDTDLW SSHYEIMQEN LRKLKEINNR LSREIRQRVG EDLNGLSLDD 120 LRSLQNKVSS SLDIVRARKV KNLEERHGNL LLDLRARLED PQYGLVDNEG DYESTIALTN 180 GASNLYAFRL HSSHLDLHHA GGFETEDLRL A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54340.1	2e-73	MIKC_MADS family protein