PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023922215.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

GATA

Protein Properties

Length: 1134aa MW: 123662 Da PI: 7.4082

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023922215.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	52.7	6e-17	996	1027	1	32
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32 C+nC+t+ Tp WRrgp+g++ LCn+CGl+++k XP_023922215.1 996 CVNCHTKVTPEWRRGPSGQRDLCNSCGLRWAK 1027 ******************************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 1134 aa Download sequence
MYRYGYHEDG YDVNGMGQTE EEGAGNYMLG QDVSMSGGQS LDEIVNQSAK IIRRQSMPQQ 60 QQLSQQYSTS PGMDPSLGAD VQRATAMMDF GGASPAVQTG AYQFNSNIMD QGGGMMVSPM 120 QIQMPSQTTQ LSQAQGAPQH RGSGDNPQSS GDLTDLSNNY NNSYDAMGHS SGAFSASPAH 180 QRSSMDMNMG ASQLNHNLRL SMDYAVDQGM NTPMSGAGMN MDMFGPVQYS NQMMNSPMQQ 240 ASSQAVSQGS NVQQRQMSQG SVSRSASVAT GQLHPPSRAH SMHTTSEKSP AQHGQTHNAP 300 SSLLAQQGAH NQFQTSGSQQ NQASNLSRNS DSYQNYQQQA QSQTQSQPEL AQDQNMQQTT 360 SGPHSSSYDG VNGPVPINLT TYNPNNQGFK WETPEGGWPS TLVGRPHAQS SYKNAYSATG 420 FDMLGVLMRV ATRPNPQINI GAVDLSCAFV VCDAEMDDTP IVYCSDNFER LTGYTKHMIL 480 GRNCRFLQSP DGQVSPGIRR KYVDDDSVLY LKNMTNLQRE AQISLINYRR GGQPFMNLLT 540 MIPITWDSDK IKFFVGFQVD LVEQPNAVTD KNPGGSYSIN YQRGMTMPPY VMPAPESVSK 600 TELGQTVSRE DVSTILATVG NGESEYAKRI WDKVLLENTD DVVHVLSLKG LFLWISPSSA 660 RVLEYEPGEL IGTALSSVCH PSDIVPVTRE LKDTSSAASV NVVFRIRRKV SGYMWFEGHG 720 SLHTEQGKGR KSIIMVGRER PVYTLSKKDL DGLGSIGENE LWSKLSTSGM FLFVSSNVRQ 780 LLDRQPDELV GVSIQTLMRS ESKAEFGRIL EHARTGMKAS VKHEMINRRG QVLSAYTTVY 840 PGDAQEGQKP TFILAQTRLI KFSRGAQMVR NNSTYSKSER NTSEPAPAKV AVHTGLSGSG 900 TSPNSVVSSG QYRNTDGTVV TYAGQFGLVI GHQDQSLASE DNLFDELKTT KSSSWQYEIR 960 QLEKRNRILA EEVQSLIAAK KKRKRRKGAG NMQKDCVNCH TKVTPEWRRG PSGQRDLCNS 1020 CGLRWAKING RVSPRTNSVY SGGAASDKAS KASASPLHQS NLPHQQLPSP FGSTAAVKSE 1080 FPTPNPSSCV VPTSEGRESQ PPPSKALRLS GDHSASMEGA SGVPASIEED VEPD

Sequence ? help Back to Top

Protein Sequence Length: 1134 aa Download sequence

MYRYGYHEDG YDVNGMGQTE EEGAGNYMLG QDVSMSGGQS LDEIVNQSAK IIRRQSMPQQ  60
QQLSQQYSTS PGMDPSLGAD VQRATAMMDF GGASPAVQTG AYQFNSNIMD QGGGMMVSPM  120
QIQMPSQTTQ LSQAQGAPQH RGSGDNPQSS GDLTDLSNNY NNSYDAMGHS SGAFSASPAH  180
QRSSMDMNMG ASQLNHNLRL SMDYAVDQGM NTPMSGAGMN MDMFGPVQYS NQMMNSPMQQ  240
ASSQAVSQGS NVQQRQMSQG SVSRSASVAT GQLHPPSRAH SMHTTSEKSP AQHGQTHNAP  300
SSLLAQQGAH NQFQTSGSQQ NQASNLSRNS DSYQNYQQQA QSQTQSQPEL AQDQNMQQTT  360
SGPHSSSYDG VNGPVPINLT TYNPNNQGFK WETPEGGWPS TLVGRPHAQS SYKNAYSATG  420
FDMLGVLMRV ATRPNPQINI GAVDLSCAFV VCDAEMDDTP IVYCSDNFER LTGYTKHMIL  480
GRNCRFLQSP DGQVSPGIRR KYVDDDSVLY LKNMTNLQRE AQISLINYRR GGQPFMNLLT  540
MIPITWDSDK IKFFVGFQVD LVEQPNAVTD KNPGGSYSIN YQRGMTMPPY VMPAPESVSK  600
TELGQTVSRE DVSTILATVG NGESEYAKRI WDKVLLENTD DVVHVLSLKG LFLWISPSSA  660
RVLEYEPGEL IGTALSSVCH PSDIVPVTRE LKDTSSAASV NVVFRIRRKV SGYMWFEGHG  720
SLHTEQGKGR KSIIMVGRER PVYTLSKKDL DGLGSIGENE LWSKLSTSGM FLFVSSNVRQ  780
LLDRQPDELV GVSIQTLMRS ESKAEFGRIL EHARTGMKAS VKHEMINRRG QVLSAYTTVY  840
PGDAQEGQKP TFILAQTRLI KFSRGAQMVR NNSTYSKSER NTSEPAPAKV AVHTGLSGSG  900
TSPNSVVSSG QYRNTDGTVV TYAGQFGLVI GHQDQSLASE DNLFDELKTT KSSSWQYEIR  960
QLEKRNRILA EEVQSLIAAK KKRKRRKGAG NMQKDCVNCH TKVTPEWRRG PSGQRDLCNS  1020
CGLRWAKING RVSPRTNSVY SGGAASDKAS KASASPLHQS NLPHQQLPSP FGSTAAVKSE  1080
FPTPNPSSCV VPTSEGRESQ PPPSKALRLS GDHSASMEGA SGVPASIEED VEPD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	980	986	KKKRKRR
2	981	987	KKKRKRR
3	981	986	KKRKRR
4	982	987	KRKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36620.1	1e-08	GATA family protein