PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023922408.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family C3H
Protein Properties Length: 244aa    MW: 28243.8 Da    PI: 7.6688
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023922408.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.63.8e-0789109526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C+ f+  G C+ Gd+C FaHg
  XP_023922408.1  89 ACSAFRT-GKCHKGDTCEFAHG 109
                     5777766.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MLKGINPSIY GFSEHQFPNL VPPEYYNNTI NNDHIDEAIF GSDEFRMYAY KIKRCPRMRS  60
HDWTECPYAH RGEKAQRRDP RKFSYSAVAC SAFRTGKCHK GDTCEFAHGV FEYWLHPARY  120
RTRACNAGRY CQRKVCFFAH TPEQLRSETN YKCHYTYRPR MISGGDGVRD GSSGQEDATT  180
PHLPLPLPVP VQLEKKHVVE NFCCDGVSEF LKSLRGLKIR DVEDNCESSE SDLPQIDWIS  240
ELVQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07500.13e-78C3H family protein