PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023922524.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 267aa MW: 30862.3 Da PI: 8.9211

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023922524.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.9	3.2e-15	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W ++Ed++l+++++ +G+g W+ +++ g++R++k+c++rw++yl XP_023922524.1 13 RGAWCAWEDDILKNYIEIHGKGKWTDLPQRAGLRRCGKSCRLRWLNYL 60 89********************************************97 PP
2	Myb_DNA-binding	56.1	8.3e-18	66	110	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++++E++l+++++k+lG+ W++Iar+++ gRt++++k++w++ XP_023922524.1 66 RGNFSEDEEDLIIKLHKLLGNS-WSLIARRLP-GRTDNEIKNYWNTI 110 89****************99.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence
MGRRPCCAKG VIRGAWCAWE DDILKNYIEI HGKGKWTDLP QRAGLRRCGK SCRLRWLNYL 60 RPDIKRGNFS EDEEDLIIKL HKLLGNSWSL IARRLPGRTD NEIKNYWNTI LSKRIKNLTS 120 DSNPRIKPVA HPVIRPKAMR CTKVILPWQP NNNQIFFNEN IVPYGNRENL FPLVQQGNNI 180 SDCLIDLDTN YLLRSDVQNS NGHQTNEINV RDIVLDLPVS RCDAKLKDLM DEGKPANWRA 240 TNPFQPNEAM DLNTLASFLD LEDTWNS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35550.1	1e-55	MYB family protein