PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023923291.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family M-type_MADS
Protein Properties Length: 165aa    MW: 19216.9 Da    PI: 8.4724
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023923291.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.39.6e-241968150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krie +s+r vtfskRr+g++KKA ELS +C+a vav +fs++++ly++ 
  XP_023923291.1 19 KRIEKHSRRIVTFSKRRKGLFKKAAELSAMCGAHVAVFVFSPKDRLYTFT 68
                    79**********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    
MAENNESKRP SGRKKIEMKR IEKHSRRIVT FSKRRKGLFK KAAELSAMCG AHVAVFVFSP  60
KDRLYTFTHP TADSVIDRFL SQHNNNNPEG SSSSACDQIL QSEWEKSIDN MELKELEGYM  120
AAMLEFKKEA YMEQVDETYI RTMVTREFFP LRPIEKPDVN NDCER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-26M-type_MADS family protein