PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023923299.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family MIKC_MADS
Protein Properties Length: 241aa    MW: 27723.3 Da    PI: 7.9938
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023923299.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.98.8e-31958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    +rienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gkl+e+ 
  XP_023923299.1  9 ERIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSHGKLFEFG 58
                    69**********************************************95 PP
2K-box97.91.5e-32761715100
           K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     + +++ e+ +++l+qe+++L++++e+Lqr+qRh+lGedLesL+lkeLq+Le+qL++ l++ R++K+e++le +e l+kke++l e+nk+L++kle
  XP_023923299.1  76 QANNVVEEGTQTLYQEVSRLRANYESLQRSQRHMLGEDLESLNLKELQHLEKQLDRTLSQARQRKTEVMLERLEGLRKKEQDLGEINKQLKSKLE 170
                     667788999************************************************************************************98 PP

           K-box 100 e 100
                     e
  XP_023923299.1 171 E 171
                     7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    
MGRGRVVLER IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS HGKLFEFGST  60
DMDKILEHYR QCCYSQANNV VEEGTQTLYQ EVSRLRANYE SLQRSQRHML GEDLESLNLK  120
ELQHLEKQLD RTLSQARQRK TEVMLERLEG LRKKEQDLGE INKQLKSKLE EHGQCTEAIQ  180
EPGNPSTVAR DNQLKVHTPQ TNHKDSEPNL QMGYNQPLAP EEAMATRNFA GGSSRNQGWL  240
L
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.15e-81MIKC_MADS family protein