PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023923549.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 384aa MW: 43594.5 Da PI: 4.7114

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023923549.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.6	1e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grWT eEde+l+++++ G g+W++ ++ g+ R++k+c++rw +yl XP_023923549.1 14 KGRWTSEEDEILIKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	51.5	2.3e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + eEde +++++ +G++ W++Ia++++ gRt++++k++w+++l XP_023923549.1 67 RGNISREEDETIIKLHSSMGNR-WSLIASHLP-GRTDNEIKNYWNSHL 112 78899***************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence
MGRAPCCDKV GLKKGRWTSE EDEILIKYIQ ANGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRSDLKRGNI SREEDETIIK LHSSMGNRWS LIASHLPGRT DNEIKNYWNS HLSRKIHSFR 120 RSSSETLPMV MDSSKADILP KRKGGRTSRW AMKKNKTYYI QKDVPKIKPK DSPLTPNIEE 180 VLLLPTPDLE QETFSSTTIN DRMVLDPKVN DNERESLALR SDEAWKCENQ RLYASGEKKT 240 ETLVPYDHDQ EGIDGGVFND IVDNDLLDPD GVLALTEGRG GYDIIDFNDG NDSGFMCADK 300 MLATHEDLQE SGQFSSNGDN GEWYSCSSIT SGFDDGVERG NEIWDEKEKM LSSLWESDNW 360 EGDSYNLSEI DSDTHDAMVA WLLS

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence

MGRAPCCDKV GLKKGRWTSE EDEILIKYIQ ANGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRSDLKRGNI SREEDETIIK LHSSMGNRWS LIASHLPGRT DNEIKNYWNS HLSRKIHSFR  120
RSSSETLPMV MDSSKADILP KRKGGRTSRW AMKKNKTYYI QKDVPKIKPK DSPLTPNIEE  180
VLLLPTPDLE QETFSSTTIN DRMVLDPKVN DNERESLALR SDEAWKCENQ RLYASGEKKT  240
ETLVPYDHDQ EGIDGGVFND IVDNDLLDPD GVLALTEGRG GYDIIDFNDG NDSGFMCADK  300
MLATHEDLQE SGQFSSNGDN GEWYSCSSIT SGFDDGVERG NEIWDEKEKM LSSLWESDNW  360
EGDSYNLSEI DSDTHDAMVA WLLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47460.1	7e-76	MYB family protein