PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023924034.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 209aa MW: 23907.4 Da PI: 9.5083

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023924034.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.9	4.9e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd++l+ ++k +G g+W++I++ g+ R++k+c++rw +yl XP_023924034.1 14 KGTWTREEDQRLIAYIKAHGEGCWRSIPKAAGLLRCGKSCRLRWINYL 61 799***************************99**********97 PP
2	Myb_DNA-binding	57.8	2.4e-18	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eEd l+++++ +lG++ W++Ia++++ gRt++++k++w+++l XP_023924034.1 67 RGNFTNEEDNLIIKLHSLLGNK-WSLIASRLP-GRTDNEIKNYWNSHL 112 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence
MGRSPCCDKS LTNKGTWTRE EDQRLIAYIK AHGEGCWRSI PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TNEEDNLIIK LHSLLGNKWS LIASRLPGRT DNEIKNYWNS HLRRKLLSRG 120 IDPLTHKPIN TDTDKGEKFM DGFGCKIEKN PVEKSLTELN LELRIGPPNQ HPPLPLERKE 180 KKVCFYCSLG LENSKYCTCG SSSNSTNDF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	8e-90	MYB family protein