PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023924099.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 292aa MW: 33092.4 Da PI: 8.9786

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023924099.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.7	4.2e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed ll ++++ +G g+W++ +++ g+ R++k+c++rw +yl XP_023924099.1 14 RGPWTPREDTLLTKYIQAHGEGHWRSMPKKAGLLRCGKSCRLRWMNYL 61 89****************************99**********97 PP
2	Myb_DNA-binding	54.2	3.4e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T++Ed+l+++++++lG++ W++Ia +++ gRt++++k++w+++l XP_023924099.1 67 RGNITPDEDDLIIRLHALLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112 7999****************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence
MGRAPCCSKV GLHRGPWTPR EDTLLTKYIQ AHGEGHWRSM PKKAGLLRCG KSCRLRWMNY 60 LRPDIKRGNI TPDEDDLIIR LHALLGNRWS LIAGRLPGRT DNEIKNYWNT HLSKRLISEG 120 TDPNTHKKLL DPLKELKRRK NNKSKSKSNN RNMQKNKSKS VANVGPEKPK VHLPKPVRVT 180 SFSLRRNDSF DWNVFSGSSG PEIKGGYVGS EMVNDVNPWC NFKDGENGVG VGFLDGDEDD 240 RDDLVNGSDF ECQSDLPSGD NSLAKLYEEY LDLLKMEETQ VDLDNFAESL LV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	139	LKELKRR
2	134	140	KELKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	4e-68	MYB family protein