PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023924102.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family LBD
Protein Properties Length: 177aa    MW: 19834.9 Da    PI: 5.0766
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023924102.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.82.4e-4014111198
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaC++lrrkC++dC lapyfpae+++kfa vhk+FGasnv+k+++ ++e+ reda++++vyeA ar+rdPvyG++g i++lq+ +++lk++l+
  XP_023924102.1  14 PCAACRMLRRKCESDCLLAPYFPAEEAEKFAGVHKVFGASNVIKMIQMVEETSREDAVKAIVYEATARLRDPVYGSAGAIFHLQKMVQELKVQLE 108
                     7********************************************************************************************99 PP

          DUF260  96 llk 98 
                     ++ 
  XP_023924102.1 109 SIS 111
                     765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    
MGFQVVAQGR AHQPCAACRM LRRKCESDCL LAPYFPAEEA EKFAGVHKVF GASNVIKMIQ  60
MVEETSREDA VKAIVYEATA RLRDPVYGSA GAIFHLQKMV QELKVQLESI SARVLESQAQ  120
RDELLGLLRN VNHLDRLAHP INAPVLDEGS FMLDDAVLMA YDPVKFPAEC DWFLLEE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.12e-44LBD family protein