PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023924137.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

Trihelix

Protein Properties

Length: 736aa MW: 81548.6 Da PI: 9.1982

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023924137.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	64	3.4e-20	644	724	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +ev++Li++r e++++++ k +++lWe++s + + g++rsp qCk+ w +l +y+++k+g+k++ +++pyf++++ XP_023924137.1 644 KWKPEEVKKLIDLRGELHSKFQVVKGRMALWEQISGSLLSDGINRSPGQCKSLWTSLVLKYEETKNGKKSK-----KSWPYFEDMN 724 7*****************************************************************984.....56*****7 PP

Sequence ? help Back to Top
Protein Sequence Length: 736 aa Download sequence
MAMKITLVIP ALDSRTPIFA SSFTMELIKK RLKENGIFVP SRLRVFRTRR KFVAGPFEIE 60 PIRVTHSIPD CCGLVLRCAD GTILHTGDWK IDETPLDGKV FDREALEELS KEGVTLMMSD 120 STNILSPGRT ISESVVANSL LRRISEAKGR VITTQFASNI HRLGSVKAAA DLTGRKLVFV 180 GMSLRTYLDA AWKDGKAPID PSTLVKIEDI DAYAPKDLLI VTTGSQAEPR AALNLASYGG 240 SHSLKLSKED VILYSAKVIP GNESRVMKML NRISEIGSSI VMGKNEGLHT SGHGYRGELE 300 EILQIVKPQH FLPIHGELLF LKEHELLGRS TGIRHSCVIK NGEMLGVSHL RNRRVLSSGF 360 TSLGKENLQL MYSDGDKAFG TSSELCIDER QRIASDGIIV VSMEILRPQN VDGMIGNSLK 420 GKIRITTRCL WLDKGKLLDA LHKAAHAALS SLPVNCPLSH IERTVAELLR KMVRKYSSKR 480 PEVIAIALEN PAAVLSDEVN ARLSGKSHVG YGTSALRKVV DGHSEENQSN RMHTEDIANI 540 QLEHSLLKNL KGEGNELERL QPEEDTIASS SSLAERPFSN SEDSDDFWKA FVTSSSPVDE 600 VAKDNNGFVP RSKHVSMVEK DSVESDKDES SKLPNSSKPV KRNKWKPEEV KKLIDLRGEL 660 HSKFQVVKGR MALWEQISGS LLSDGINRSP GQCKSLWTSL VLKYEETKNG KKSKKSWPYF 720 EDMNRILSDL DVMAAK

Sequence ? help Back to Top

Protein Sequence Length: 736 aa Download sequence

MAMKITLVIP ALDSRTPIFA SSFTMELIKK RLKENGIFVP SRLRVFRTRR KFVAGPFEIE  60
PIRVTHSIPD CCGLVLRCAD GTILHTGDWK IDETPLDGKV FDREALEELS KEGVTLMMSD  120
STNILSPGRT ISESVVANSL LRRISEAKGR VITTQFASNI HRLGSVKAAA DLTGRKLVFV  180
GMSLRTYLDA AWKDGKAPID PSTLVKIEDI DAYAPKDLLI VTTGSQAEPR AALNLASYGG  240
SHSLKLSKED VILYSAKVIP GNESRVMKML NRISEIGSSI VMGKNEGLHT SGHGYRGELE  300
EILQIVKPQH FLPIHGELLF LKEHELLGRS TGIRHSCVIK NGEMLGVSHL RNRRVLSSGF  360
TSLGKENLQL MYSDGDKAFG TSSELCIDER QRIASDGIIV VSMEILRPQN VDGMIGNSLK  420
GKIRITTRCL WLDKGKLLDA LHKAAHAALS SLPVNCPLSH IERTVAELLR KMVRKYSSKR  480
PEVIAIALEN PAAVLSDEVN ARLSGKSHVG YGTSALRKVV DGHSEENQSN RMHTEDIANI  540
QLEHSLLKNL KGEGNELERL QPEEDTIASS SSLAERPFSN SEDSDDFWKA FVTSSSPVDE  600
VAKDNNGFVP RSKHVSMVEK DSVESDKDES SKLPNSSKPV KRNKWKPEEV KKLIDLRGEL  660
HSKFQVVKGR MALWEQISGS LLSDGINRSP GQCKSLWTSL VLKYEETKNG KKSKKSWPYF  720
EDMNRILSDL DVMAAK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	0.0	Trihelix family protein