PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023924416.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MIKC_MADS

Protein Properties

Length: 226aa MW: 26066.7 Da PI: 10.0713

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023924416.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88.5	3.6e-28	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvt+skRrng++KKA+EL vLCda+v++i++sstgk++ey XP_023924416.1 9 KRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSMIMISSTGKVQEYV 58 79***********************************************7 PP
2	K-box	80	5.6e-27	71	169	1	99
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 yqk++ + +++++e++q+el+kLk+ +++L++e+R++ Ge+ ++Lsl+ ++ Leq++e+++k iR++K++++ +q+++ +kk ++++e+++++ XP_023924416.1 71 YQKAKEIDIWSSHYERMQRELKKLKEVNRSLRTEIRQRRGESANDLSLEKMHILEQDMESAVKVIRDRKYQVINNQTQTFKKKLRNAKEIHRNIL 165 78899999*************************************************************************************99 PP K-box 96 kkle 99 ++++ XP_023924416.1 166 HEID 169 9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence
MARGKIQIKR IENTTNRQVT YSKRRNGLFK KANELTVLCD AKVSMIMISS TGKVQEYVSP 60 STTTKQLIDE YQKAKEIDIW SSHYERMQRE LKKLKEVNRS LRTEIRQRRG ESANDLSLEK 120 MHILEQDMES AVKVIRDRKY QVINNQTQTF KKKLRNAKEI HRNILHEIDA GNEDPQYGLV 180 DNGGDYGAVI GCSNGDPHIF ALRLRPRQPN FHSGAGSDLT TYTLLE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54340.1	1e-88	MIKC_MADS family protein