PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023924562.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 300aa MW: 32866.7 Da PI: 8.2293

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023924562.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.5	1.5e-18	12	57	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde l ++v+++G ++W+ I++ + gR++k+c++rw + XP_023924562.1 12 KGPWSPEEDEMLRKLVQRHGARNWSVISKAIS-GRSGKSCRLRWCNQ 57 79****************************.*********985 PP
2	Myb_DNA-binding	57.9	2.4e-18	66	108	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++eEd l+v+a++++G++ W+tIar ++ gRt++ +k++w++ XP_023924562.1 66 AFSAEEDNLIVQAHAKYGNK-WATIARLLN-GRTDNAIKNHWNST 108 79****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence
MEATQRDLDR VKGPWSPEED EMLRKLVQRH GARNWSVISK AISGRSGKSC RLRWCNQLSP 60 EVEHRAFSAE EDNLIVQAHA KYGNKWATIA RLLNGRTDNA IKNHWNSTLK RKFSSMSDDT 120 TTTTTTTADE SLNRPRKKSN PGSGSGLYCS PSSPSGSDVS DSGHPAISTE HVTRPVARTG 180 AIFIMPSQQD ESPPPPPPPP PSQNNININI NKNNEPSTLL TLGLPGTSTT TTTTESQTEL 240 TSCDSAPTLR VCDDINHNNN NNKSPPLKKN SDLVSPELLA VMQDMIKIEI KNYMAALLGN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23290.1	1e-64	MYB family protein