PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023924576.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 350aa MW: 39243.1 Da PI: 7.5657

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023924576.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.7	1.1e-17	24	71	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT +Ed l+++++ +G g+W++ ar+ g++Rt+k+c++rw++yl XP_023924576.1 24 RGPWTVDEDFTLINYIANHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 71 89********************************************97 PP
2	Myb_DNA-binding	49	1.4e-15	77	120	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T +E++l+++++ ++G++ W++Ia++++ gRt++++k++w++ XP_023924576.1 77 RGNITLQEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 120 7899****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MDIKGRGRSM SSTSQIDEDM DLRRGPWTVD EDFTLINYIA NHGEGRWNSL ARCAGLKRTG 60 KSCRLRWLNY LRPDVRRGNI TLQEQLLILE LHSRWGNRWS KIAQHLPGRT DNEIKNYWRT 120 RVQKHAKQLK CDVNSKQFKD TMRYLWMPRL VERIQAATVA PANTSIAATA ATATATTGAC 180 SIGSSTSTKT TTTTTTNNNS NNYHINNNNL DVQTGQAVLP HGVAIGHDFR GAQVTPSYNT 240 PENSSNTGSS DSFGAQVSPV SDLTDYYNIP VNNNLSLECF QASQVGYQDS LTSPSGYFNN 300 GLDFQAMEQS NQWLDGGDTS DNLWNVDDLW FLQQQLNNNN NNNNNNHNNI

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MDIKGRGRSM SSTSQIDEDM DLRRGPWTVD EDFTLINYIA NHGEGRWNSL ARCAGLKRTG  60
KSCRLRWLNY LRPDVRRGNI TLQEQLLILE LHSRWGNRWS KIAQHLPGRT DNEIKNYWRT  120
RVQKHAKQLK CDVNSKQFKD TMRYLWMPRL VERIQAATVA PANTSIAATA ATATATTGAC  180
SIGSSTSTKT TTTTTTNNNS NNYHINNNNL DVQTGQAVLP HGVAIGHDFR GAQVTPSYNT  240
PENSSNTGSS DSFGAQVSPV SDLTDYYNIP VNNNLSLECF QASQVGYQDS LTSPSGYFNN  300
GLDFQAMEQS NQWLDGGDTS DNLWNVDDLW FLQQQLNNNN NNNNNNHNNI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49620.1	9e-88	MYB family protein