PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023924802.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family RAV
Protein Properties Length: 302aa    MW: 34952.3 Da    PI: 8.9265
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023924802.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.81.3e-082672153
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53
                    s++kGV    ++g+W A+I +      +k ++lg +  +e+Aa+a+++a  kl
  XP_023924802.1 26 SRFKGVM-PLSSGKWGARISHK-----YKPYWLGAHQKEEQAARAYDRASIKL 72
                    6788885.5669*********3.....5********************98887 PP
2B377.51.4e-24145249196
                     EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                     f+k+lt++dv +++ l +pk+fa ++           +++ +es++lt++d++ rsW+++++++k+s++yv+t+GW++F k n+L+ +D+v F++
  XP_023924802.1 145 FQKELTHNDVANKN-LLIPKEFALKYfpplaiidsdkNEERRESIKLTFYDKHCRSWTFQYSFWKSSKSYVFTNGWSHFLKMNNLNHKDIVFFYR 238
                     99*********999.******************9987556679***************************************************7 PP

                     -SSSEE..EEEE CS
              B3  85 dgrsefelvvkv 96 
                      ++ e++ v+ +
  XP_023924802.1 239 CET-EENSVFYL 249
                     654.44445555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    
MVVETPLSDD NLKNENPSSF SGGSSSRFKG VMPLSSGKWG ARISHKYKPY WLGAHQKEEQ  60
AARAYDRASI KLQRRDAPLN FPWTNYSDQE SIFQSQYSNE EILNMIRDQT YSSKFKKFRS  120
SHSSIKENPT CNSMNDQGIS YQLLFQKELT HNDVANKNLL IPKEFALKYF PPLAIIDSDK  180
NEERRESIKL TFYDKHCRSW TFQYSFWKSS KSYVFTNGWS HFLKMNNLNH KDIVFFYRCE  240
TEENSVFYLI DAQPKNVENS VSGGNMEQEM GLKGIINNGL DAASMRQEEA NKVLKLFGVQ  300
IG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.11e-51RAV family protein