PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023925149.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MIKC_MADS

Protein Properties

Length: 253aa MW: 28944 Da PI: 7.5036

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023925149.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88.4	3.9e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien rqvtfskRr+g+lKKA+EL +LCdaevaviifs+tgkl+e+ss XP_023925149.1 9 KRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSS 59 79***********************************************96 PP
2	K-box	66.6	8.3e-23	78	172	6	100
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++++e + +++ ++el+ Lk+e+ Lq +q +llG+dL+ lkeLq++eqqL ++l +++kK++ll++q+e+++ ke+++ en++Lrk++ee XP_023925149.1 78 TSAVEYKAEKQESKELDVLKDEVARLQMKQLRLLGKDLTGVGLKELQHIEQQLSEGLLAVKEKKEQLLMDQLEQSRLKEQRAMLENETLRKQVEE 172 4556777788999*******************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence
MGRGKIEIKR IENANSRQVT FSKRRAGLLK KAQELAILCD AEVAVIIFSN TGKLFEFSSA 60 GMRRTLSRYN KCLDSMETSA VEYKAEKQES KELDVLKDEV ARLQMKQLRL LGKDLTGVGL 120 KELQHIEQQL SEGLLAVKEK KEQLLMDQLE QSRLKEQRAM LENETLRKQV EELRGFFPPA 180 ERPVPSYREY YPTERKNSHA NHGVVSPDPG CEIEKEDSDT TLQLGLSTEI YRKMKEPGRE 240 THSNDSGNQM DLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13790.1	4e-90	MIKC_MADS family protein