PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023925198.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family LBD
Protein Properties Length: 223aa    MW: 24408.6 Da    PI: 8.7102
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023925198.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.32.3e-42431421100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+Ca++C+++pyf  ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq+++l+ael+
  XP_023925198.1  43 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQAELN 137
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  XP_023925198.1 138 AVRTE 142
                     99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MSRERERFDD EVGKRIKRET DASSQMGRRH MLGPPGTLNT ITPCAACKLL RRRCAQECPF  60
SPYFSPHEPQ KFASVHKVFG ASNVSKMLME VPESQRADAA NSLVYEANVR LRDPVYGCMG  120
AISALQQQVQ SLQAELNAVR TEILKYKYRE ANIIPSSHHH LALLTSSGGV SIAAPPPTPP  180
PTTPPPPPPF PPNSSSSSMY NQTITSAADY STISSSDNVS YFG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.12e-87LBD family protein