PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023925955.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family BBR-BPC
Protein Properties Length: 236aa    MW: 25886.7 Da    PI: 10.5813
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023925955.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind239.52.4e-7340236106301
       GAGA_bind 106 ksidslqqlsepqledsavelreeeklealpieeaae..eakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvl 198
                     + ++ +q+  ep ++ +++ +    +  +++i++a++  +++++k++ k+ +++  k+ + k++kk+++ + kk+k +s++e ++++k  i++ +
  XP_023925955.1  40 NPLQGSQMNPEPGIAVTPIRTIPATTEPKKNINSATKpaKVRKQKNSMKEPNQTASKVCRPKQAKKTPS-TSKKTKGQSMPEAKREKKIPINIDM 133
                     445555555555565556554444444444444444400444444444445555566666666666444.44555555555667777779***** PP

       GAGA_bind 199 ngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHG 293
                     ++ ++D s++P+P CsCtG +r CYkWG+GGWqS+CCt+++S yPLP+s++r+g+R+agrKmS+ga+ klL +La+eG+dl +pvDLkdhWA+HG
  XP_023925955.1 134 DKTDFDFSGVPPPYCSCTGNPRACYKWGAGGWQSSCCTINVSEYPLPMSSTRPGSRMAGRKMSNGAYGKLLLRLATEGHDLTHPVDLKDHWARHG 228
                     *********************************************************************************************** PP

       GAGA_bind 294 tnkfvtir 301
                     tnkfv i+
  XP_023925955.1 229 TNKFVIIK 236
                     *****998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    
MGTYTNRNPM IPEATAGASV PHFTWFYPGS FMSASKSNSN PLQGSQMNPE PGIAVTPIRT  60
IPATTEPKKN INSATKPAKV RKQKNSMKEP NQTASKVCRP KQAKKTPSTS KKTKGQSMPE  120
AKREKKIPIN IDMDKTDFDF SGVPPPYCSC TGNPRACYKW GAGGWQSSCC TINVSEYPLP  180
MSSTRPGSRM AGRKMSNGAY GKLLLRLATE GHDLTHPVDL KDHWARHGTN KFVIIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35550.32e-64BBR-BPC family protein