PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023926086.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family LBD
Protein Properties Length: 261aa    MW: 28436.2 Da    PI: 7.0322
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023926086.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260972e-304105197
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C++lr++C+++C+++p++     p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG++g+++++++ql+q+
  XP_023926086.1   4 SCNGCRILRKGCSDSCTIRPCLqwiktPESQANATFFLAKFYGRAGLINLINAGPEHLRPAIFKSLLYEACGRIVNPIYGSTGLLWSGSWQLCQA 98 
                     6********************************************************************************************** PP

          DUF260  91 kaelall 97 
                     ++e++l 
  XP_023926086.1  99 AVEAVLK 105
                     *998875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    
MRLSCNGCRI LRKGCSDSCT IRPCLQWIKT PESQANATFF LAKFYGRAGL INLINAGPEH  60
LRPAIFKSLL YEACGRIVNP IYGSTGLLWS GSWQLCQAAV EAVLKGLPIT QVSSESAFKA  120
CDIRHVSKEE IQRPSDQLHK VKSRRSRFKK SSAASTHKPK VESVSDELAG DTWYELGVSV  180
KKMSHDDEFR TSENRSCGGG GAEAETDCVS AETVEASLAN SDERAEGSDV ELDLDLSLGL  240
GNWGRKTCNV DVAHVDLVLP A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.13e-73LBD family protein