PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023926324.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 714aa MW: 79675.3 Da PI: 6.7641

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023926324.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.1	0.00028	405	429	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C C+k+F rk+n + H +tH XP_023926324.1 405 YPCMyhGCTKRFGRKENVRAHVQTH 429 778888*****************99 PP
2	zf-C2H2	23	2e-07	435	457	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC C+k+F r+++LkrHi H XP_023926324.1 435 FKCDLCDKTFVRQHDLKRHITIH 457 89******************988 PP
3	zf-C2H2	11.8	0.00073	466	483	5	22
TTTEEESSHHHHHHHHHH CS zf-C2H2 5 dCgksFsrksnLkrHirt 22 +Cg+sF r++ L+rH ++ XP_023926324.1 466 ICGQSFARHDALTRHRQR 483 7**************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 714 aa Download sequence
MLPTNSTSSV QSRRNQHRRQ QSLEVPIIAN PSAAHSRRGQ QGLRGHRRGL SLDQSLTALS 60 QPSKSRPLHP QNLLTPTGQA GSPPVRIPLD STNPGRLPTN TQHYQIKQET QQQSIAQPGY 120 QAQDFQSHLQ QQLNGVIHPS STPTLQQPIP TLPHQQHALQ ELQHHLDWYR KMYGASPNTN 180 VVARPFLDGQ SAGTQIPLRT HVMPVTMQLN TIQTQQQPIH NVFQSQVSHK PQVHTVPNTP 240 QPYTQGWPSP PSSTSKHVRS HSFQLDVAPL PDLMHTDFAQ SGVSFADTTG YASSSYSSSH 300 VDPASPGRQA EHMPTLFEEC GMLHEHQISH LEPPANLLLS ATEGPHDFND PDFDFGASHI 360 TAVVPRQALL NQLGPDIPAS IVETGVQNFE VQQYIGDFDE IDKKYPCMYH GCTKRFGRKE 420 NVRAHVQTHL GDRQFKCDLC DKTFVRQHDL KRHITIHSDD RPHGCICGQS FARHDALTRH 480 RQRGMCVGTL PGFEKDPADL PKRGRPKKQR PEMGERVEKA VKTRKYNKKK ANETTENELP 540 QVQQNYASSN YTASDRSFPV TPPDTSDAFD ADAFLNMAEV NQHAPSPVWR DTPPTSPATG 600 ISPGMLSQKT PNDYYEDWSS PAEFSMNNNE LGPINAQPDP IEDIFSPPGE SMTDSSVYGW 660 SDNDLPFEHN DINARPHDSF APSAVFDRND EMTNDLSKAG KTLADVLDQW LADN

Sequence ? help Back to Top

Protein Sequence Length: 714 aa Download sequence

MLPTNSTSSV QSRRNQHRRQ QSLEVPIIAN PSAAHSRRGQ QGLRGHRRGL SLDQSLTALS  60
QPSKSRPLHP QNLLTPTGQA GSPPVRIPLD STNPGRLPTN TQHYQIKQET QQQSIAQPGY  120
QAQDFQSHLQ QQLNGVIHPS STPTLQQPIP TLPHQQHALQ ELQHHLDWYR KMYGASPNTN  180
VVARPFLDGQ SAGTQIPLRT HVMPVTMQLN TIQTQQQPIH NVFQSQVSHK PQVHTVPNTP  240
QPYTQGWPSP PSSTSKHVRS HSFQLDVAPL PDLMHTDFAQ SGVSFADTTG YASSSYSSSH  300
VDPASPGRQA EHMPTLFEEC GMLHEHQISH LEPPANLLLS ATEGPHDFND PDFDFGASHI  360
TAVVPRQALL NQLGPDIPAS IVETGVQNFE VQQYIGDFDE IDKKYPCMYH GCTKRFGRKE  420
NVRAHVQTHL GDRQFKCDLC DKTFVRQHDL KRHITIHSDD RPHGCICGQS FARHDALTRH  480
RQRGMCVGTL PGFEKDPADL PKRGRPKKQR PEMGERVEKA VKTRKYNKKK ANETTENELP  540
QVQQNYASSN YTASDRSFPV TPPDTSDAFD ADAFLNMAEV NQHAPSPVWR DTPPTSPATG  600
ISPGMLSQKT PNDYYEDWSS PAEFSMNNNE LGPINAQPDP IEDIFSPPGE SMTDSSVYGW  660
SDNDLPFEHN DINARPHDSF APSAVFDRND EMTNDLSKAG KTLADVLDQW LADN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	2e-08	C2H2 family protein