PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023926716.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family Trihelix
Protein Properties Length: 533aa    MW: 60808.6 Da    PI: 5.0398
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023926716.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.22.5e-2953136186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rW++qe+la++++r++m++++r++++k+plWe+vs+k++e g++rs+k+Ckek+en+ k++k++k+ +++r   + + +++f+ql+
  XP_023926716.1  53 RWPRQETLAMLKIRSDMDDAFRDASSKAPLWEQVSRKLAELGYNRSAKKCKEKFENIYKYHKRTKDVRSSRP--NGKAYRFFEQLQ 136
                     8*********************************************************************84..4456******98 PP
2trihelix101.37.7e-32369454187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+k+ev aLi++r++++ r++++  k+plWee+s +m++ g+ r++k+Ckekwen+nk++k++ke++kkr s++s+tcpyf+ql+a
  XP_023926716.1 369 RWPKDEVEALIKLRTNLDFRYQENGPKAPLWEEISLAMKKLGYDRNAKRCKEKWENINKYFKRVKESNKKR-SDDSKTCPYFQQLDA 454
                     8*********************************************************************8.89999********85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    
MLEISTVPES NTATTGNREN DEGGGSVSVG SGEEERVGGG AEEGGDRSFG GNRWPRQETL  60
AMLKIRSDMD DAFRDASSKA PLWEQVSRKL AELGYNRSAK KCKEKFENIY KYHKRTKDVR  120
SSRPNGKAYR FFEQLQALDG HTQLPSPSPV KIQETTMVVR TVEPRNVVQN AIPHSIVRNG  180
NLAENYTPTT SSSSKESEGM RKKKKKLTEY FEDLMKEVIE KQENLQKKFI DVLEKCEQDR  240
IAREEEWKIQ ELDRIKRERE LLVQERSIAA AKDAAVLAFL KKFSEQASSV QLPEEAIMVT  300
IPVEKFVERQ ENDNGGNVMD KQEKQNGENV LDRQEDDNGG NNLERQENDN GENSIQMSSG  360
RWPQMSSARW PKDEVEALIK LRTNLDFRYQ ENGPKAPLWE EISLAMKKLG YDRNAKRCKE  420
KWENINKYFK RVKESNKKRS DDSKTCPYFQ QLDALYSGKT KKVENSVNSG CELKPEELLM  480
HMMSGQEERQ RTESLTEDGE GENVNEIEGD KEDEDGDNYQ VVASDPSSTA NLG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-112Trihelix family protein