PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023927341.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MIKC_MADS

Protein Properties

Length: 251aa MW: 28761 Da PI: 9.517

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023927341.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	55	1e-17	11	51	3	43
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i n+s r+ tf kR++g+lKK +ELS+LCd++ + ii+s+ XP_023927341.1 11 ITNDSSRKATFKKRKKGLLKKVSELSTLCDIKTCAIIYSPY 51 89*************************************85 PP
2	K-box	19.5	4e-08	108	159	25	76
K-box 25 kkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleq 76 ++e e+ q R l+Ge+L++L++ +L+ L ++ks+k+i +k + ll +q XP_023927341.1 108 NREKEMTQVMYRSLVGEGLQNLNIVDLNDLGWVIDKSIKEIDEKIKSLLEQQ 159 2333445566699******************************999999877 PP

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence
MTRKKVKLAY ITNDSSRKAT FKKRKKGLLK KVSELSTLCD IKTCAIIYSP YDTQPEVWPS 60 PMEVQNIIAK FKMMPEMDQS KKMVNQESFL RQRIAKSEEQ LKKQQRDNRE KEMTQVMYRS 120 LVGEGLQNLN IVDLNDLGWV IDKSIKEIDE KIKSLLEQQA VPPPPPPPAA APAPQVVTMT 180 SHASRTTKQD MFNDEAAARS TNTDLATDSS QNQQWLMDLL KSNDNMGFGR NDDMLPYSLH 240 TNNFWSNFPF P

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	3	25	RKKVKLAYITNDSSRKATFKKRK
2	22	26	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	3e-59	M-type_MADS family protein